SE2850343

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9348
  • Sorghum bicolor
  • SE2850343
  • PIF/harbinger
  • To49
  • chromosome_1:15311954-15312305
  • TTA
  • AGGCCCTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3'
TT             TTTCCTACCC          CATCCA  C     -AATCT     CAC   CAT   ----ACA       TAC            ACTA      C      -GT     ATC   A         T     CC      C  CA G      CT  A   CTACA
  AGGCCCTGTTTAG          AAAATTTTTT      TC CATCG      TTGGA   ATG   GGA       TTAAATG   ATAAAAAAATAA    ATTACA AGTTTG   TGAAA   GCG GATGAATCT TTAAG  TAGTTA TC  T ATTAGC  TA GTG     
  |||||||||||||          ||||||||||      || |||||      |||||   |||   |||       |||||||   ||||||||||||    |||||| ||||||   |||||   ||| ||||||||| |||||  |||||| ||  | ||||||  || |||     G
  TCCGGGACAAATC          TTTTAAAAAA      AG GTAGC      AGCCT   TAC   CCT       AATTTAT   TATTTTTTTGTT    TAATGT TCGAGC   GCTTT   CGT CTGTTTAGA AATTC  ATTAAT AG  A TAATCG  GT CAC     
AT             TAACCTCTAC          -CCCAC  T     CTATAC     TCC   AGC   CCCCAAA       GAT            ----      A      AGT     -GA   G         T     AT      T  AC G      -T  A   CCAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End