Plant MITE

SE2850344

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9349
Sorghum bicolor
SE2850344
PIF/harbinger
To4
chromosome_2:68938171-68938421
TTG
GGGCCTTGTTTGCTTC

Secondary structure and sequence

TSD TIR

5'

3'

TT          ----   TT CCAAAAA           TTTT    ---    CCCATCACATCGAATCTTGCGACATATGCATAGAGCATTAAATATATATTAAAAAAATAACTAATTGCATACTTTG
  GGGCCTTGTT    TGC  C       TTTTGCAAAAT    CAAG   ATTC                                                                            
  ||||||||||    |||  |       |||||||||||    ||||   ||||                                                                             
  TCCGGAACAA    ACG  G       AAAACGTTTTA    TATG   TCGT                                                                            
GT          ATCA   TT --AAAAA           --CC    ACA    AAAAGCAAACATAAACTGTTTATAACAGGTTAGTACCTAATTGATCCGAGTTTTCTAAGCAGAGCGTTTAATGTCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850344

TTGGGCCTTGTTTGCTTCCCAAAAATTTTGCAAAATTTTTCAAGATTCCCCATCACATCGAATCTTGCGACATATGCATAGAGCATTAAATATATATTAAAAAAATAACTAATTGCATACTTTGCCTGTAATTTGCGAGACGAATCTTTTGAGCCTAGTTAATCCATGATTGGACAATATTTGTCAAATACAAACGAAAATGCTACAGTATCCATTTTGCAAAAAAAAAGTTGCAACTAAACAAGGCCTTG

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