SE2810348

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9353
  • Sorghum bicolor
  • SE2810348
  • Tc1/Mariner
  • St6
  • chromosome_8:50076853-50077113
  • TA
  • TACTCCCTCTGTCCCTGAAAGCTGTAATTTATAGAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                       G      A       GTTCTA            AA         CAAA      T    AAATG    GATTTA AATACCAAATTAATACCATTAGATTTATCATAGAAT
TACTCCCTCTGTCCCTGAAAGCT TAATTT TAGAGTT      AGTCAAATTTTT  AACTTTGAC    TTTATA AAAA     CTAA      T                                    
||||||||||||||||||||||| |||||| |||||||      ||||||||||||  |||||||||    |||||| ||||     ||||      |                                    A
ATGAGGGAGACAGGGACTTTCGA GTTGAG ATCTTAG      TCAGTTTGAAAA  TTGAAACTG    AAATAT TTTT     ATAG      T                                    
                       A      G       GCACAA            AA         ATTG      C    --CTC    ------ TATAGATACTATATTTTACTCATAGAATACTTTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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