SE2850361

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9366
  • Sorghum bicolor
  • SE2850361
  • PIF/harbinger
  • To27
  • chromosome_3:52702024-52702741
  • TTA
  • AGAGCAACTCCAACCATTATGCAAATAGACTTGGCATTTATCAAAATGCATAAAACTCC

Secondary structure and sequence

TSD    TIR
5'



3'
TT      A                AA    C   -      --AT    A    TAA      AAAAAAAAA      --  CGTT   --   TT  A  T  CATTTTACATAGCTATGCATTTGGAGGGGGAAACTTGGCATATATGCCAAAGGAGTCCGGCTATGCAAATAGAGATCACGGGATTCTCGGTTCCACCTCGCGGGCTTTTTTCTTCCCTTCGCGCGGTTTCCCTTCGCGCCGCCACCACTTCGCGCGATAGGAGAAGCACCGCACGTCCTCCTTCGCCAGCTTGACTGATGGCGGCGACCTGATGGAGATCGGTACTGGAGCCAAGGGGCGAACCTGTACGACGACGAACTGATGGC
  AGAGCA CTCCAACCATTATGCA  TAGA TTG GCATTT    CAAA TGCA   AACTCC         CCCTCC  AA    ATG  CAT  GG CT TG                                                                                                                                                                                                                                                                          
  |||||| ||||||||||||||||  |||| ||| ||||||    |||| ||||   ||||||         ||||||  ||    |||  |||  || || ||                                                                                                                                                                                                                                                                          C
  TCTCGT GAGGTTGGTAATACGT  ATTT AAT CGTAAA    GTTT ACGT   TTGGGG         TTACTT  AC    CGT  CGA  TT TT AG                                                                                                                                                                                                                                                                          
AT      A                AA    C   A      ATCC    A    ---      -------GT      TT  ----   TC   --  -  -  CCCACTAGAGGTTGGCAATACGTTTTACGGTTCAGGTAATAGAAAAAAAAGGCCTTTAAAACAAAGCGCCGTGAGGAAGGGCGCGCCGGTTAGCTAGGGCGCGGTTTGTCGGGCGGCACCAGAGGGCAAGTGGTTAAGGGCGCGGTTTGTCGGCGCGTCATGGCTAACACTCGACGCGTCAAGCAGCAAGGGCAAGCGTCATGGCTAACGTCATGGCTACAGGGCAAGGCAATCAAGGGCAAGTGGCATGGTCAAGCAGCAGACAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End