SE2850364

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9369
  • Sorghum bicolor
  • SE2850364
  • PIF/harbinger
  • To1
  • chromosome_10:766337-766784
  • TAA
  • AGGCCTTGTTTAGTTCGCAAAAATTTTCAAGATTTCCTGTCACATCGAATCTTTTGTCGCATGCATGGAGCATTAAATATAGATGAAAATAAAAACTAATTGCACAGTTTACCTGTAATTTGTGAGATGAATCTTTTGAGTCTAGTTACTCCTTGTTTGGACAATGTTTGTCA

Secondary structure and sequence

TSD    TIR
5'



3'
TA               CG                                     TGT             C       A                               AC                                       CT  T     C    T      AATAA    A                    AA    TT         AA
  AGGCCTTGTTTAGTT  CAAAAATTTTCAAGATTTCCTGTCACATCGAATCTTT   CGCATGCATGGAG ATTAAAT TAGATGAAAATAAAAACTAATTGCACAGTTT  CTGTAATTTGTGAGATGAATCTTTTGAGTCTAGTTACTC  TG TTGGA AATG TTGTCA     AAAC AAAGTGCTACAGTAGCCAAA  CGAA  TTTTTGCGA  
  |||||||||||||||  |||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||  || ||||| |||| ||||||     |||| ||||||||||||||||||||  ||||  |||||||||   
  TCCGGAACAAATCAA  GTTTTTAAAAGTTCTAAGGGGCAGTGTAGCTTAGAAA   GTGTACGTACTTC TAATTTA ATCTACTTTTATTTTTGATTAACGTGTCAAA  GACATTAAACGCTCTGCTTAGAAAACTCGGATCAATGAG  AT AACCT TTAT AACAGT     TTTG TTTCACGATGTCATCGGTTT  GTTT  AAAAGCGCT  
AA               AG                                     TAT             A       C                               CA                                       AT  T     A    T      GTTTG    C                    TG    TT         TG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End