SE2850372

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9377
  • Sorghum bicolor
  • SE2850372
  • PIF/harbinger
  • To1
  • chromosome_5:54187588-54187836
  • TTA
  • AGGCCTTGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            CTTTAC       TCCAAAA  T        TTCTCCGTCACATCGAATCTTGCGACACATGCATGAAGCATTAAATATAGACGAAAACAAAAACTAATTACACAGTTTGTC
  AGGCCTTGTTTA      TCCGAAA       AG TTTCAAGA                                                                                 
  ||||||||||||      |||||||       || ||||||||                                                                                 T
  TCCGGAACAAAT      AGGCTTT       TC AAAGCGAT                                                                                 
AT            ----CA       TTTAAAG  T        GACATCGTGAAAGCAAAAATAAACTGTTTATAATAGGTTAGTACTTGATTGATCATAGTTTTCTAAGCAGAGCACTAAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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