Plant MITE

SE2850380

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9385
Sorghum bicolor
SE2850380
PIF/harbinger
To4
chromosome_3:26488223-26488460
TTA
AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD TIR

5'

3'

TT         T      TCAA       --------     TTCCCTATCACATCGAATTTTGCGGCACATTCATGAAGCATTAAATATAGATAAAAAAGATAAGTAATTGCACAGTTTAGA
  AGGCCTTGT TAGTTC    AATTTTT        CAAGA                                                                                 
  ||||||||| ||||||    |||||||        |||||                                                                                 T
  TCCGGAACA ATCAAG    TTAAAAA        GCGAT                                                                                 
AT         C      -TGC       AAACCAAA     GACATCGTGAAAGCCGAAATAAACTATTGATAATAAATTAATACCTGATTGATCTGAGTTTTCTAAGTAGAGCGTTTAATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850380

TTAGGCCTTGTTTAGTTCTCAAAATTTTTCAAGATTCCCTATCACATCGAATTTTGCGGCACATTCATGAAGCATTAAATATAGATAAAAAAGATAAGTAATTGCACAGTTTAGATGTAATTTGCGAGATGAATCTTTTGAGTCTAGTTAGTCCATAATTAAATAATAGTTATCAAATAAAGCCGAAAGTGCTACAGTAGCGAAACCAAAAAAAATTCGTGAACTACACAAGGCCTTA

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