SE2850381

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9386
  • Sorghum bicolor
  • SE2850381
  • PIF/harbinger
  • To1
  • chromosome_1:68604295-68604532
  • TAA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               CGCA        CA  --ATT    GTCACATCGAATCTTTGGTCGCATGTATGGAGTATTAAATATAGACGAAAATAAAAACTAATTGTACAGTTTATCTGT
  AGGCCTTGTTTAGTT    AAAATTTT  AG     CTCC                                                                              
  |||||||||||||||    ||||||||  ||     ||||                                                                              A
  TCCGGAACAAATCAA    TTTTAAAA  TC     CGAT                                                                              
AA               -ACA        AC  AAAAC    GACATCGTGAAAGCAAAAATAAACTGTTTGTAACAAGTTAATACCTCATTGATCCGAGTTTTCTAAGTAGAGTGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3