SE2850383

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9388
  • Sorghum bicolor
  • SE2850383
  • PIF/harbinger
  • To2
  • chromosome_10:4418046-4418299
  • TAA
  • AGGTCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               CACCC   --    CAAAAAGTTTTTAAGATTCCCCGTCACATCGAATCTTGTGGCACATGCATGAAACATTAAATATAGACGAAAACAAAAACTAATTACACATTTTAGCTG
  AGGTCTTGTTTAGTT     TGA  AAAC                                                                                                   
  |||||||||||||||     |||  ||||                                                                                                    
  TCCGGAGCAAATCAA     TCA  GCTT                                                                                                   
AA               ----A   AA    TTCACTTCTCAAAAGCCATGACATCGTGAAAGCAAACAAACACTGTTTATAATAGGTTAGTACCTGATTGATCCTAGTTTTCTAAGCAGAGCACTAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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