SE2850387

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9392
  • Sorghum bicolor
  • SE2850387
  • PIF/harbinger
  • To1
  • chromosome_7:56205567-56205815
  • TAA
  • AGGCCTTGTTTAGATACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               A  TCCAAAAACTCAAAACTTT     ----   TTC - TCACATCGAATCTTGTGGCACATGCATGAAGTATTAAATAGAGATAAAAAGAATAACTAATTGCATATTTTA
  AGGCCTTGTTTAGAT CA                   ACAAG    ATT   C G                                                                        
  ||||||||||||||| ||                   |||||    |||   | |                                                                        C
  TCCGGAATAAATCTA GT                   CTGTG    CGT   A A                                                                        
AA               C  --TTTTCAAAAACCTAAAA     ACAT   --- A AGCAAAAATAAAGTGTTTGTAATAGATTAATACCTCATTGATCCGAATTTTCTAAGCAGAGCACTAAATATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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