Plant MITE

SE2810388

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9393
Sorghum bicolor
SE2810388
Tc1/Mariner
St9
chromosome_2:76818107-76818369
TA
TACTCCCTCCATTCCAAATTATAAGACATTCTAAAAATCTTGGAGAGTCAAAGCATCTCAAGTTTGACCAAAATTATAGA

Secondary structure and sequence

TSD TIR

5'

3'

             C                    A                     C          C          -     A    CAA    TTATGACATTAAATAGATATACTATGAAAATATAATTA
TACTCCCTCCATT CAAATTATAAGACATTCTAA AATCTTGGAGAGTCAAAGCAT TCAAGTTTGA CAAAATTATA GAGAG ATTA   AGAT                                      
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| ||||| ||||   ||||                                       
ATGAGGGAGGTAA GTTTAATATTCTGTAAGATT TTAGAACTTTTCAGTTTCGTA AGTTCAAACT GTTTTAATAT CTATT ATAT   TATT                                      
             C                    C                     A          A          G     -    ---    GTAAATAATATGGTTGATTCATAGTAATCTAAGAAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810388

TACTCCCTCCATTCCAAATTATAAGACATTCTAAAAATCTTGGAGAGTCAAAGCATCTCAAGTTTGACCAAAATTATAGAGAGAATTACAAAGATTTATGACATTAAATAGATATACTATGAAAATATAATTAATGAAGAATCTAATGATACTTAGTTGGTATAATAAATGTTATTATATTATCGTATAATTTTGATCAAACTTGAAATGCTTTGACTTTTCAAGATTCTTAGAATGTCTTATAATTTGCAATGGAGGGAGTA

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