SE2850393

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9398
  • Sorghum bicolor
  • SE2850393
  • PIF/harbinger
  • To1
  • chromosome_4:12125570-12126076
  • TAA
  • AGGTCTTGTTTAGTTCCCAACAAAAATTTAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA             -TT   AA             AAATTCAAA               A                CAC               A       TA A                 -G               CA           A      A         TA  C   A                    A         AG              TTTTCGCAA             A  ACTT
  AGGTCTTGTTTAG   CCC  CAAAAATTTAAAA         ATTTTCCATCGCATC AATTTTACGGCATATG   GAAGCATTAAATATA ATAAAAA  A AACTAATTGCACAGTTT  TTGTAAATCGCGAGA  AATCTTTTAAG CTAGTT CTCCATGAT  GA AAT TTTGTCAAATAAAAACGAAA TGCTACAGT  CAAAATCCAAAAAG         CTAAACAAGGCCT AA    
  |||||||||||||   |||  |||||||||||||         ||||||||||||||| ||||||||||||||||   ||||||||||||||| |||||||  | |||||||||||||||||  |||||||||||||||  ||||||||||| |||||| |||||||||  || ||| |||||||||||||||||||| |||||||||  ||||||||||||||         ||||||||||||| ||     
  TCCGGAACAAATC   GGG  GTTTTTGGGTTTT         TAAGAGGTAGTGTAG TTAGAATGCCGTGTAC   CTTCGTAATTTATAT TATTTTT  T TTGATTAACGTGTCAAA  GACATTTAGTGCTCT  TTAGAAAATTC GATCAA GAGGTACTA  CT TTA AAACAGTTTATTTTTGCTTT ACGATGTCA  GTTTTAGGTTTTTT         GATTTGTTCCGGA TT    
AA             TAT   -G             GAAATATTC               C                ATA               C       TC A                 TG               AC           G      C         CC  A   C                    C         CA              TTAAACCTA             A  CAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End