Plant MITE

SE2850398

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9403
Sorghum bicolor
SE2850398
PIF/harbinger
To2
chromosome_7:60262957-60263205
TTA
AGGCCTTGTTTACTTTCAAAATATTTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TT            C    -A   T      C     -----     T   AGCACTTTCATTTGTATTTGACAAATATTGTCTAATTATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTCC
  AGGCCTTGTTTA TTTC  AAA ATTTTG AAAAT     GTGAA AGT                                                                             
  |||||||||||| ||||  ||| |||||| |||||     ||||| |||                                                                              
  TCCGGAACAAAT AAGG  TTT TAAAAC TTTTA     TCTAA AGG                                                                             
AT            C    GA   T      A     AAAAG     -   GCAGTGTAGCTTAGAAATCTGCATACATACCTCATAATTTATATCTACTTTTATTTTTGATTAATGTGTCAAACTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850398

TTAGGCCTTGTTTACTTTCAAAATATTTTGCAAAATGTGAATAGTAGCACTTTCATTTGTATTTGACAAATATTGTCTAATTATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTCCGATCAAACTGTGTAATTAGTTTTTATTTTCATCTATATTTAATACTCCATACATACGTCTAAAGATTCGATGTGACGGGAAATCTGAAAAATTTTACAAAATTTTTAGGGAACTAAACAAGGCCTTA

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