Plant MITE

SE2850402

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9407
Sorghum bicolor
SE2850402
PIF/harbinger
To2
chromosome_1:17862575-17863161
TTA
TAGGGCCTGTTTAGATTGGGAA

Secondary structure and sequence

TSD TIR

5'

3'

T        -      A  G    CGAAAATT     --  TGTCACATCGGATGTGTCGGAAGGATCTCGGGAGGGGTTTTTAGAAACTAATAAAAAAACAAATTACATACCTCGTCAGAAAACTGCAAGACAAATTTATTAAGTATAATTAATCTGTCATTAGCATATGTGGGTTACTGTAGCACTTAAGGCTAATCATGGAGTAACTAGGCTTAAAAGATTCGTCTCGCGATTCTTAACTAAACTGTGTAATTAGTTTATTTTTTAATCTACATTTAATGTTCCATGCATGTG
 TAGGGCCT GTTTAG TT GGAA        TTTTG  GG                                                                                                                                                                                                                                                               
 |||||||| |||||| || ||||        |||||  ||                                                                                                                                                                                                                                                                
 ATTCCGGA CAAATC AG TTTT        GTTTT  CC                                                                                                                                                                                                                                                               
         A      A  G    -TTAAAAC     AT  TTATTCTGGTGAAAGCAAACATAAACTGTTTATAATAGGTTAGTACATGATTGATCTGAGTTTTCTAAACAGAGCAGATAAGGCTGGTTTGAAACGTTAATCAAAAATAAAAACAGATATAAATTATGAAGTACGTACGCAGATTTCTAAACTACACTGCCCCTTAGACTTTTTAAAACGTTTAAAAAAATCTTTGATTCCGGGACAAATCAAAAGATGGTTTTAAAAAAAGTAGGTAGGGTAGCTTAGAAACCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850402

TTAGGGCCTGTTTAGATTGGGAACGAAAATTTTTTGGGTGTCACATCGGATGTGTCGGAAGGATCTCGGGAGGGGTTTTTAGAAACTAATAAAAAAACAAATTACATACCTCGTCAGAAAACTGCAAGACAAATTTATTAAGTATAATTAATCTGTCATTAGCATATGTGGGTTACTGTAGCACTTAAGGCTAATCATGGAGTAACTAGGCTTAAAAGATTCGTCTCGCGATTCTTAACTAAACTGTGTAATTAGTTTATTTTTTAATCTACATTTAATGTTCCATGCATGTGTCCAAAGATTCGATGGGATGGATGAAAAAAATTTTGGTAGAAAACTAAACAGGGCCTTAGTTTCTAAAAAAATTTGCAAAATTTTTCAGATTCCCCGTCACATCAAATCTTTAGACGCATGCATGAAGTATTAAATATAGACAAAAATAAAAACTAATTGCAAAGTTTGGTCGGAATAGACGAGACAAATCTTTTGAGTCTAGTTAGTACATGATTGGATAATATTTGTCAAATACAAACGAAAGTGGTCTTATTCCTATTTTGCAAAATTTTTTGGAACTAAACAAGGCCTTA

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