Plant MITE

SE2850410

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9415
Sorghum bicolor
SE2850410
PIF/harbinger
To1
chromosome_4:2508056-2508293
TAA
AGGCCTTGTTCAGTTCGCAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TA          C           ACGGGTGAAAAA        TAGCACTTTCGTTTTTATTTGACAAATATTGTCTAATTATAGAGTAAGTAGGCTCAAAAGATTCATCTCGTGGTTTAC
  AGGCCTTGTT AGTTCGCAAAA            CGGCACTG                                                                              
  |||||||||| |||||||||||            ||||||||                                                                              A
  TCCGGAACAA TCAAGCGTTTT            GTTCTAAG                                                                              
AA          A           -------AAAAA        AGGCAGTGTAGCTTAGAACGCCGTGTACGTACCTCGTAATTTATATGTACTTTTGTTTTTGATAAACGTGTCAAGTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850410

TAAGGCCTTGTTCAGTTCGCAAAAACGGGTGAAAAACGGCACTGTAGCACTTTCGTTTTTATTTGACAAATATTGTCTAATTATAGAGTAAGTAGGCTCAAAAGATTCATCTCGTGGTTTACAGATGAACTGTGCAAATAGTTTTTGTTTTCATGTATATTTAATGCTCCATGCATGTGCCGCAAGATTCGATGTGACGGAGAATCTTGAAAAATTTTGCGAACTAAACAAGGCCTAA

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