Plant MITE

SE2850411

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9416
Sorghum bicolor
SE2850411
PIF/harbinger
To1
chromosome_3:62721244-62721493
TTA
AGGCCTTGTTTAGT

Secondary structure and sequence

TSD TIR

5'

3'

 TT            G --       AAATTTCGGATTTCGCTACTGTAGCACTTTCGTTTTTATTTGACAAATATTGTCCAATTATGAACTAACTAGGATCAAAAGATTCGTCTCGCGATTTACA
   AGGCCTTGTTTA T  TCCGAAA                                                                                                    
   |||||||||||| |  |||||||                                                                                                    G
   TCCGGAACAAAT A  TGGGGCT                                                                                                    
GAT            G AG       TTAGGTTTTTCAAAAGTTCTAAGGGGCAGTGTAGCTTAGAACGCCGTGTACGTACTTCGTAATTTATATCTGCTTTTGTTTTTGATTAATATGTCAAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850411

TTAGGCCTTGTTTAGTTCCGAAAAAATTTCGGATTTCGCTACTGTAGCACTTTCGTTTTTATTTGACAAATATTGTCCAATTATGAACTAACTAGGATCAAAAGATTCGTCTCGCGATTTACAGATAAACTGTATAATTAGTTTTTGTTTTCGTCTATATTTAATGCTTCATGCATGTGCCGCAAGATTCGATGTGACGGGGAATCTTGAAAACTTTTTGGATTTCGGGGTGAAGTAAACAAGGCCTTAG

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