Plant MITE

SE2850413

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9418
Sorghum bicolor
SE2850413
PIF/harbinger
To2
chromosome_2:70729260-70729507
TTA
AGGCCTTGTTTAGTTCCCAAAAAATTTTGCAAAATT

Secondary structure and sequence

TSD TIR

5'

3'

TT                 C    A             TTTC   -   ------- C    ACATCGAATCTTTAGACACATGCATGAAGTATTAAATATAGACAAAAATAAAACTAATTGCACAGTT
  AGGCCTTGTTTAGTTCC AAAA ATTTTGCAAAATT    AGA TTT       C CGTC                                                                   
  ||||||||||||||||| |||| |||||||||||||    ||| |||       | ||||                                                                    
  TCCGGAACAAATCAAGG TTTT TAAAACGTTTTAG    GAC TCG       A AACA                                                                   
AT                 -    A             CTGT   A   AAAAAGC -    TAAACTGTTTATAATAGGTTAGTATTAGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAAGCTAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850413

TTAGGCCTTGTTTAGTTCCCAAAAAATTTTGCAAAATTTTTCAGATTTCCCGTCACATCGAATCTTTAGACACATGCATGAAGTATTAAATATAGACAAAAATAAAACTAATTGCACAGTTTGATCGAAATTGACGAGACGAATCTTTTGAGCCTAGTTAGATTATGATTGGATAATATTTGTCAAATACAAACGAAAAAGCTACAGTGTCGATTTTGCAAAATATTTTGGAACTAAACAAGGCCTTA

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