Plant MITE

SE2850414

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9419
Sorghum bicolor
SE2850414
PIF/harbinger
To1
chromosome_7:58932085-58932334
GTA
GGCCTTGTTTAGATGCA

Secondary structure and sequence

TSD TIR

5'

3'

GTA              G  CCCAAAATCCC        ACAA      CCAT   ATCGAATCT        -------------A       -   ATTA   A   A AAAAAAAGATAACTAATTGCACAGTTTACATGTAA
   GGCCTTGTTTAGAT CA           AAAATTTT    GATTTT    CAC         TGTGGCAC              TGCATGA AAC    AAT TAG T                                   
   |||||||||||||| ||           ||||||||    ||||||    |||         ||||||||              ||||||| |||    ||| ||| |                                    
   CCGGAACAAATCTA GT           TTTTGAAA    CTAAAA    GTG         ACATCGTG              CTGTTTG AAC    GGT TAG T                                   
ATG              G  -----------        -AAC      --CT   ---------        AAAGCAAAAATAAA       T   ---A   -   - ACCTCATTGATCCGAATTTTCTAAGCAGAGCACTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850414

GTAGGCCTTGTTTAGATGCACCCAAAATCCCAAAATTTTACAAGATTTTCCATCACATCGAATCTTGTGGCACATGCATGAAACATTAAATATAGATAAAAAAAGATAACTAATTGCACAGTTTACATGTAAATCACGAGACGAATCTTTTAAGCCTAGTTACTCCATGATTGGACAATGTTTGTCAAATAAAAACGAAAGTGCTACAGTGTCAAAATCCAAAAAGTTTTTGGATCTAAACAAGGCCGTA

Copy Cancel