SE2850416

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9421
  • Sorghum bicolor
  • SE2850416
  • PIF/harbinger
  • To3
  • chromosome_2:25355749-25355997
  • TAA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             A     AAAAAAT    -  TTCGCTACTG  -  --  TTTCGTTTGTTTGTGCTAAATATTGTCCAATCATAGACTAACTAGGGTCAAAAGATTCATCTCGCGATTTACAGTCAAACT
  AGGCCTTGTTTAG TGTGA       TTGG AT          TA GT  AC                                                                                 
  ||||||||||||| |||||       |||| ||          || ||  ||                                                                                 G
  TCCGGAACAAATC AAGTG       GGGC TT          AG TT  TC                                                                                 
AA             -     -------    T  ----------  G  TT  AAAAGTTCTAAGGGACAGTGTAGCTTAGAACGCCGTGTACGTATTTCGTAATTTATATCTGCTTTTGTTTTTGATTAGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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