SE2850418

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9423
  • Sorghum bicolor
  • SE2850418
  • PIF/harbinger
  • To1
  • chromosome_1:1308983-1309228
  • TAA
  • AGGCCTTGTTTAGATCTGA

Secondary structure and sequence

TSD    TIR
5'



3'
TA             ---      TTTTT          AA  CTGT  CA        TTTAT    CAAACA    CCA  ---         ACTAGGCTTAAA   TT  TTTC  -    -     AC
  AGGCCTTGTTTAG   ATCTGA     TGAAAATTTT  CA    AG  TTTTCGTT     TTGA      TTGT   AC   TATGGAGTA            AGA  CG    GC GATT TACAG  
  |||||||||||||   ||||||     ||||||||||  ||    ||  ||||||||     ||||      ||||   ||   |||||||||            |||  ||    || |||| |||||  A
  TCCGGAACAAATC   TGGGTT     GTTTTTGAAA  GT    TC  AAAGGCAG     AGCT      AACG   TG   GTACCTCGT            TCT  GT    TG TTAA ATGTC  
AA             AAG      --TTT          -A  ----  TA        --TGT    ---TAG    CCG  TAT         AATTTATATCTA   TT  -TTT  A    T     AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End