SE2850421

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9426
  • Sorghum bicolor
  • SE2850421
  • PIF/harbinger
  • To1
  • chromosome_8:6036224-6036461
  • TTA
  • AGGCCTTGTTTAGTTTGTAAAATTTTTGGGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                      T    --      TG    CTGTAGCACTTTCGTTTTTATTTGATAAACATTGTCCAATCATGGAGTAACTAGGCTCAAAAGATTCATCTCACAAAT
  AGGCCTTGTTTAGTTTGTAAAA TTTT  GGGTTT  GCTA                                                                              
  |||||||||||||||||||||| ||||  ||||||  ||||                                                                               
  TCCGGAACAAATCAAGCGTTTT AAAA  TCTAAG  AGGC                                                                              
AT                      T    GT      --    AGTGTAGCTTAGAAACCAGCGTACGTACCTCGTAATTTATATCTACTTTTATTTTTGATTAACGTGTCAAATGGACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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