SE2850422

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9427
  • Sorghum bicolor
  • SE2850422
  • PIF/harbinger
  • To1
  • chromosome_5:45103924-45104172
  • TAA
  • AGGCCTTGTTTAGATTCAAAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             A    ----      TTTT       AACA     GTACTTTCGTTTTTATTT   --  ATATTGTCTAATTATAGAGTAACTAGGCTTAACAGATTCGTCTCGCGATTTATAGGCAAACTGT
  AGGCCTTGTTTAG TTCA    AAAAAT    AGATTTT    CTGTA                  GAC  AA                                                                
  ||||||||||||| ||||    ||||||    |||||||    |||||                  |||  ||                                                                 
  TCCGGAATAAATC AAGT    TTTTTG    TTTGAAA    GTTCT                  AAG  AC                                                                
AA             -    GGGG      -TTT       ---A     ------------------   AG  AGTGTAGCTTAGAACGGCGTGTACGTACTTCGTAATTTATATCTATTTTTGTTTTTAATTAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3