SE2810431

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9436
  • Sorghum bicolor
  • SE2810431
  • Tc1/Mariner
  • St6
  • chromosome_4:44913660-44913920
  • TA
  • TACTCCCTCCGTCCACGAAAGAGTCAATTTCTAGAGTTGTCCTAAGTCAAACTTTTTAAACTTTGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
                                  A   -  -  TA                C      CAAA   C       -AAAT  T  G           C    TA       TA  TTCATCATA
TACTCCCTCCGTCCACGAAAGAGTCAATTTCTAG GTT GT CC  AGTCAAACTTTTTAAA TTTGAC    TTT TAGAAAA     GC AA ATTTATAGTAT AAAT  GTATTAT  GA         
|||||||||||||||||||||||||||||||||| ||| || ||  |||||||||||||||| ||||||    ||| |||||||     || || ||||||||||| ||||  |||||||  ||         G
ATGAGGGAGGCAGGTGCTTTCTTAGTTAAGGATC TAG CA GG  TCAGTTTGAAAAATTT AAACTG    AAA ATCTTTT     TG TT TAGATATTATG TTTA  TGTAATA  CT         
                                  C   G  C  --                C      ATTG   T       CTCAT  -  G           T    CG       TA  TTTATATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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