Plant MITE

SE2810432

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9437
Sorghum bicolor
SE2810432
Tc1/Mariner
St13
chromosome_6:50495924-50496160
TA
TACTCCCTCCATCCCAAATTATAAGACGTTTGACTTTTTTATCCCAACTTTGACCACTCGTCTTATTCAAAAAATTTACGCAAACATAGTCAAATTTAAGTCATTCTTG

Secondary structure and sequence

TSD TIR

5'

3'

     CC      C                         T  C    C        C          C         AC     C   G   AA   -AA   -ATT    AAGAACTTCT
TACTC  TCCATC CAAATTATAAGACGTTTGACTTTTT AT CCAA TTTGACCA TCGTCTTATT AAAAAATTT  GCAAA ATA TCA  TTT   GTC    CTTG          
|||||  |||||| ||||||||||||||||||||||||| || |||| |||||||| |||||||||| |||||||||  ||||| ||| |||  |||   |||    ||||           
ATGAG  AGGTAG GTTTAATATTCTGCAAACTGAAAAA TG GGTT AAACTGGT AGCAGAATAA TTTTTTAAA  CGTTT TAT AGT  AGA   CAG    GAAC          
     TT      A                         C  T    C        A          -         CA     -   -   AA   AAA   CACC    CAAATAATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810432

TACTCCCTCCATCCCAAATTATAAGACGTTTGACTTTTTTATCCCAACTTTGACCACTCGTCTTATTCAAAAAATTTACGCAAACATAGTCAAATTTAAGTCATTCTTGAAGAACTTCTATTAATAAACCAAGCCACGACAAAAGAAATGATATTTTGCACAAATTTTTTAATAAGACGAATGGTCAAACTTGGTGTCAAAAAGTCAAACGTCTTATAATTTGAGATGGATTGAGTA

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