SE2850433

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9438
  • Sorghum bicolor
  • SE2850433
  • PIF/harbinger
  • To60
  • super_12:4461131-4461492
  • TTA
  • AGAGCATCTCCAAGGGTTTTGTATTTGAGGTTTGCATTTGAGTAATTTGC

Secondary structure and sequence

TSD    TIR
5'



3'
TT                     -  -T    GG    -      -A  A      CAAA       ----------AAA     -  TCCAAC    --  G  TTT      T   A       AAC           -------     CAAA  -   -  AAAATGCCAAGCTGTAGACGACTTTGCAAACCCGA
  AGAGCATCTCCAAGGGTTTTG TA  TTGA  TTTG CATTTG  GT ATTTGC    AAGCTTC             AGAGG TA      GGTT  TT CA   GGAGTT GCA TTTGGAC   TTGGCAAATGA       AGGAG    CT TGG CA                                   
  ||||||||||||||||||||| ||  ||||  |||| ||||||  || ||||||    |||||||             ||||| ||      ||||  || ||   |||||| ||| |||||||   |||||||||||       |||||    || ||| ||                                   T
  TCTCGTAGAGGTTTCCGAAAC GT  AACT  GAAC GTAAAC  CG TAAACG    TTTGAGG             TTTCC AT      CCAG  GA GT   CCTTAA CGT AAACCTG   AACCGTTTGCT       TCTTC    GA GTC GC                                   
AT                     C  TT    --    T      AA  A      ----       GTATTATTTTATG     T  TTTTAT    TA  G  -TC      C   -       ---           ATTTTTA     --CA  G   C  GCGCGCGAAAGGAGCGCGCACTAAAACGAGTGCGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End