Plant MITE

SE2850434

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9439
Sorghum bicolor
SE2850434
PIF/harbinger
To2
chromosome_3:67629624-67629872
CTA
GGCCTTGTTTACTTTCTCAAAAATTTTGCAAAATTTTTC

Secondary structure and sequence

TSD TIR

5'

3'

CTA                TC     T          -------------     -------     -----        CATCAAATCTTTAGACGTATGCATGAAGTATTAAATATAGATAAAAATAAAAACTAA
   GGCCTTGTTTACTTTC  AAAAA TTTGCAAAAT             TTTTC       AGATT     CTCCGTCA                                                         
   ||||||||||||||||  ||||| ||||||||||             |||||       |||||     ||||||||                                                         T
   CCGGAACAAATGAAGG  TTTTT AAACGTTTTA             AAAAG       AAACT     TAACAGGT                                                         
ATC                -T     T          TACTTGTCATCGC     CAAACAT     ATTTA        TAATACCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAGGCTGGTTTGACACGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850434

CTAGGCCTTGTTTACTTTCTCAAAAATTTTGCAAAATTTTTCAGATTCTCCGTCACATCAAATCTTTAGACGTATGCATGAAGTATTAAATATAGATAAAAATAAAAACTAATTGCACAGTTTGGTCGGAATTGACGAGACGAATCTTTTGAGCCTAGTTAGTCCATAATTGGACAATATTTATCAAATACAAACGAAAACGCTACTGTTCATATTTTGCAAATTTTTTTGGAAGTAAACAAGGCCCTA

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