SE2850437

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9442
  • Sorghum bicolor
  • SE2850437
  • PIF/harbinger
  • To1
  • chromosome_3:71917620-71917857
  • TTA
  • AGGCCTTGTTTAGTTCCCAAAATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               -CCC         C       CCC  - ACA ------  AATCTTACGGCACATGCATGAAGCATTAAATATAGATGAAAACAAAAACTAATTACGCAGTTTACCTGT
  AGGCCTTGTTTAGTT    AAAATTTTT AAGATTC   GT C   T      CG                                                                     
  |||||||||||||||    ||||||||| |||||||   || |   |      ||                                                                     A
  TCCGGAACAAATCAA    TTTTAAAAA CCTAAAG   CG T   G      TG                                                                     
AT               ACCC         -       ---  A --- ACATCG  AAAGCAAACAAACACCGTTTATAATAGGTTAGTATCTGATTGATCCTAGTTTTCTAAGCAGAGCGCTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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