Plant MITE

SE2830438

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9443
Sorghum bicolor
SE2830438
hAT
Hat34
chromosome_5:2500022-2500204
TCTTATTC
CACTGGCGGAGCCA

Secondary structure and sequence

TSD TIR

5'

3'

TCTTATTC  C           ------------- -      ---- CCACCCCGGGCGGCCGGCCGGGCTCCTCGCTAAAATGCAAAAGAAATCTTCT
        CA TGGCGGAGCCA             C CGCCCG    G                                                    
        || |||||||||||             | ||||||    |                                                    T
        GT ACCGCTTCGGT             C GGCCCG    G                                                    
CTTATTCT  C           CTTCTAAAGTCCT G      TTAA AGTAATTCATTTTTATAAATTGATATTTTAGTGTCTTAAGATATATTTATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830438

TCTTATTCCACTGGCGGAGCCACCGCCCGGCCACCCCGGGCGGCCGGCCGGGCTCCTCGCTAAAATGCAAAAGAAATCTTCTTTATATTTATATAGAATTCTGTGATTTTATAGTTAAATATTTTTACTTAATGAGAATTGCCCGGGCTCCTGAAATCTTCTGGCTTCGCCACTGTCTTATTC

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