SE2850440

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9445
  • Sorghum bicolor
  • SE2850440
  • PIF/harbinger
  • To27
  • chromosome_3:63529619-63530306
  • TTA
  • AGAGCAACTCCAACCATTATGCAAATGGACTTGGTATTTACCAAAATG

Secondary structure and sequence

TSD    TIR
5'



3'
TT      A                AA    C   -      --AC    A  CATA          AAAAAA    -     TCGTT      TT  A  TTGTATTTTATATAGCTATGCATTTGGAGGGGGAAACTTGGCATATATGCCGAAGGAGTCCGGCTATGCAAATAGAGATCACGGGATTCTCGGTTCCACCTCGCGGGCTTTTTTCCTTCCCTTGGTGCGGTTTCCCTTCGCACCGCCACCACTTCGCACGATAGGAGAAGCATCGCGCGTCCTCCTTCGCCAGCTTCGCGTGCGCGTTTGGACGAAGCAGCGCACAATAGGACGACGCAACGCGCGATAAGA
  AGAGCA CTCCAACCATTATGCA  TGGA TTG GTATTT    CAAA TG    AAACTCCAAA      CCCC TCCAA     ATGCAT  GG CT                                                                                                                                                                                                                                                            
  |||||| ||||||||||||||||  |||| ||| ||||||    |||| ||    ||||||||||      |||| |||||     ||||||  || ||                                                                                                                                                                                                                                                            C
  TCTCGT GAGGTTGGTAATATGT  ACTT AAT CATAAA    GTTT AC    TTTGGGGTTT      CTTT ACCGT     CCGATT  TT AG                                                                                                                                                                                                                                                            
AT      A                AA    C   A      ATCC    A  ---A          -----A    T     ----T      --  -  CCCACTAGAGGTTGGCAATACGTTTTACGGTTCAGATAGTAGAAAAAAAAAGGCCCTTTAAAATAAAGCGCCGTGAGGAAGGGCGCACCGGTTAGCTAGGGCGCAGTTTATCGGGCGGCAGCAGAGGGCAAGTGGTTAAAGGCGTGGTTTGTCGGCACGTCATGGCTAGCACTCGGCGCGGTTTTGGGATCTATAGCGTAACTACTTCTTCCGCATGGACCGGCCGCAACTACTTCTTCCGCAGCATCTAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End