SE2850441

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9446
  • Sorghum bicolor
  • SE2850441
  • PIF/harbinger
  • To2
  • chromosome_3:70212521-70212769
  • ATA
  • GGCCTTGTTTAGTTCCAAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA                -                 CGACAC  T   A  TTC   T   -- T   CAAAAATTATCAAATCATATACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTCGACCA
   GGCCTTGTTTAGTTCC AAAAAATTTTGCAAAAT      TG AGC CT   GTT GTA  T TGA                                                             
   |||||||||||||||| |||||||||||||||||      || ||| ||   ||| |||  | |||                                                              
   CCGGAACAAATCAAGG TTTTTTAAAACGTTTTA      TC TAA AG   GGC AGT  A GCT                                                             
ATA                G                 -AAAAG  -   -  ---   -   GT -   TAGAAATCTGCGTACGTACCTCATAATTTATATCTACTTTTATTTTTGATTAACGTGTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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