SE2850444

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9449
  • Sorghum bicolor
  • SE2850444
  • PIF/harbinger
  • To61
  • chromosome_1:3604829-3605067
  • TTA
  • AGGCCTTGTTTAGTTTTCAAAAAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   CC          TT          ----------    ---  TTC   TCATATCGAATCTTGCGGCACATACATAGAGTATTAAATTTAGACAAAAACAAAAACTAATTACATAGTTTGC
  AGG  TTGTTTAGTT  CAAAAAATTT          CAAG   AT   TCG                                                                         
  |||  ||||||||||  ||||||||||          ||||   ||   |||                                                                         T
  TCC  AACAAATCAA  GTTTTTTAAA          TATG   TC   GTA                                                                         
AT   AA          CC          ACTTAAAATC    ACA  ---   AAAGAAAATAAACACCATTTATAATAGGTTAGTATCTGATTAATCCTAGTTTTCTAAGTAGAGTGCTAAATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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