Plant MITE

SE2830445

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9450
Sorghum bicolor
SE2830445
hAT
Hat35
chromosome_8:48495155-48495328
CTCATGCT
CATGCTCAGGGGCGAAGCCACGTTA

Secondary structure and sequence

TSD TIR

5'

3'

CT    CT            -C      -------------  C       --------    ACGGGCACCAGGGTAAACAAAAGTTTTGTTAATAA
  CATG  CAGGGGCGAAGC  ACGTTA             TG TTGCCTG        GTGC                                   
  ||||  ||||||||||||  ||||||             || |||||||        ||||                                    
  GTAC  GTCCCCGCTTCG  TGTAGT             CG GACAATT        TGAT                                   
TC    TC            AT      TTCATTACCACCA  T       TCGTTTTA    TTATATGAATAGTATACACCACTTATAATCAGTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830445

CTCATGCTCAGGGGCGAAGCCACGTTATGCTTGCCTGGTGCACGGGCACCAGGGTAAACAAAAGTTTTGTTAATAAATTGACTAATATTCACCACATATGATAAGTATATTTAGTATTTTGCTTTAACAGTGCACCACCATTACTTTGATGTTAGCTTCGCCCCTGCTCATGCT

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