SE2850446

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9451
  • Sorghum bicolor
  • SE2850446
  • PIF/harbinger
  • To1
  • chromosome_9:42991456-42991693
  • TTA
  • AGGCCTTGTTTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                CTAAAAATTTTC      -------- CCTATCACATCGAATCTTTATACACATGCATGAAGCATTAAATATAGATAAAAATAAAAACTAATTGTACAGTTTATCTGTAAT
  AGGCCTTGTTTAGTTT            AAGATT        C                                                                                    
  ||||||||||||||||            ||||||        |                                                                                     
  TCCGGAACAAGTCAAG            CGCTTT        G                                                                                    
AT                ------------      AAAAAACC AAACCGACGACATCGTGAAAGCAAACAAACACTGTTAATAATAGGTTAATACCTCATTGATCCGAGTTTTCTAAGCAGAGCGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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