Plant MITE

SE2850454

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9459
Sorghum bicolor
SE2850454
PIF/harbinger
To38
chromosome_9:46048548-46048848
TAA
AGGCCAGACTCAATGGGAGTTTCATGTGAGTTTCATTTGC

Secondary structure and sequence

TSD TIR

5'

3'

TA       A    A   -          -  -A     ---AT    A   AATAGGTTGCCACATAAGCTATTTTGATGACATGGCAGTGTATTTAAGAAGAGAGAGAAGAAATGTGTTTCATCTAGATAAAATTCTCTTGGCACGATTACC
  AGGCCAG CTCA TGG GAGTTTCATG TG  GTTTC     TTGC TTA                                                                                                      
  ||||||| |||| ||| |||||||||| ||  |||||     |||| |||                                                                                                       
  TCCGGTC GAGT ACC CTCAAAGTAC GC  CAAAG     GACG GTA                                                                                                      
AA       A    C   T          C  AA     GTTCT    -   CAGTATACTTTATTTTACTTTGAACTTACTTTGTGGGTGAGAGTTACCTCTCAAAGTAAAGTATCAAAGTATTCGTAAATTAAGGTTCTGAGTATCTTTCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850454

TAAGGCCAGACTCAATGGGAGTTTCATGTGAGTTTCATTTGCATTAAATAGGTTGCCACATAAGCTATTTTGATGACATGGCAGTGTATTTAAGAAGAGAGAGAAGAAATGTGTTTCATCTAGATAAAATTCTCTTGGCACGATTACCAACTTTCTATGAGTCTTGGAATTAAATGCTTATGAAACTATGAAATGAAACTCTCCATTGAGAGTGGGTGTTTCATTCAAGTTTCATTTTATTTCATATGACATGGCAGTCTTGGAAACAACGCCATGAAACTCTCCACTGAGACTGGCCTAA

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