SE2850457

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9462
  • Sorghum bicolor
  • SE2850457
  • PIF/harbinger
  • To1
  • chromosome_4:62281085-62281322
  • TAA
  • AGGCCTTGTTCAGTTCGCAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA          C           ACTTGTGAAAAA        TAGCACTTTCGTTTTTATTTGATAAACATTGTCCAATTATAGAGTAACTAGGCTCAAAAGATTCATCTCGCGGTTTAC
  AGGCCTTGTT AGTTCGCAAAA            CGGCACTG                                                                              
  |||||||||| |||||||||||            ||||||||                                                                              A
  TCCGGAACAA TCAAGCGTTTT            GTTCTAAG                                                                              
AA          A           -------AAAAA        GGGCAGTGTAGCTTAGAACGCCGTGTACGTACCTCGTAATTTATATGTACTTTTGTTTTTGATAAACGTGTCAAGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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