SE2810459

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9464
  • Sorghum bicolor
  • SE2810459
  • Tc1/Mariner
  • St9
  • chromosome_1:67628228-67628504
  • TA
  • TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAGAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
                          C                     CAAAGC      A    AACCAAAATTATAGAAAA     CAAAG   ------    GCATCATCAAATAGATATACTATGAAAATATAATTAATGAAGAACCTA
TACTCCCTCCATCCCAAATTGTAAGT ATTCCAAGAATCTTGGAGAGT      ATCTCA GTTT                  AATTA     TTT      TGTG                                                
|||||||||||||||||||||||||| |||||||||||||||||||||      |||||| ||||                  |||||     |||      ||||                                                 
ATGAGGGAGGTAGGGTTTAATATTCA TAAGGTTCTTAGAACCTTTTA      TAGAGT CAAA                  TTTAC     AGT      TGGT                                                
                          A                     ------      C    --------------CTCG     -----   TCATAC    TTAAATATACCATCCTATTATTGTAAATACTATAGTTGATTCATAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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