SE2820462

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9467
  • Sorghum bicolor
  • SE2820462
  • Mutator
  • M12
  • chromosome_1:31980806-31981451
  • TTTAACTCA
  • AGAGGCTTTTACTTATGTGCCATTATAAAAGTTGATAATTACTCATAAACCATTAAAAATTAAGTTCTCATAAGTGTCACTGCTCTAAACTTTTTTACTATTCATGCCATTTCCATTAGATTTAGCTCTAATGGTGTTAAACTGCGAGTGTGAAAATTCATAAATACCCTCAGGCTTGAATATGTAATTATTTTTTAGCATTTTAATGACCTCAAATGAAAAAACTCAGAACTAGAAAGTTGTAGATCTC

Secondary structure and sequence

TSD    TIR
5'



3'
TTTAACTC      T     T      C              A        C    ACC       --              A             A         A  A   -           A   G                           A         T   T           G C               ---TT    -             C                                        GACA          CT                -CTTCA    ACTA  AACA      A   AAAT
        AGAGGC TTTAC TATGTG CATTATAAAAGTTG TAATTACT ATAA   ATTAAAA  ATTAAGTTCTCATA GTGTCACTGCTCT AACTTTTTT CT TTC ATGCCATTTCC TTA ATTTAGCTCTAATGGTGTTAAACTGCG GTGTGAAAA TCA AAATACCCTCA G TTGAATATGTAATTA     TTTT AGCATTTTAATGA CTCAAATGAAAAAACTCAGAACTAGAAAGTTGTAGATCTC    ATATCTATAA  TTTGTATAAAAAATAT      TTGA    CG    AAAAAG TAT    
        |||||| ||||| |||||| |||||||||||||| |||||||| ||||   |||||||  |||||||||||||| ||||||||||||| ||||||||| || ||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| | |||||||||||||||     |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    ||||||||||  ||||||||||||||||      ||||    ||    |||||| |||    A
        TCTCCG AAATG ATACGC GTAATATTTTCAAT ATTAATGA TATT   TAATTTT  TAATTCAAGAGTAT CACGGTGATGAGA TTGAGAAAA GA GAG TGCGGTGAAGG AGT TAAATTGAGATTGTTACAATTTGACGT CATACTTTT AGT TTTATGGGAGT C GACTTATACGTTAAT     AAAA TCGTAGAATTGTT GAGTTTACTTTTTTGAGTTTTGATCTTTCAACATCTAGAG    TGTAGATGTT  AGATATATTTTTTATA      AACT    GC    TTTTTC ATA    
ATTCAATT      T     T      A              C        A    CAA       TT              C             C         C  -   A           C   G                           C         C   -           A A               TAAAC    C             A                                        ----          AT                AAAATA    -AAG  -ATA      -   CTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End