SE2850463

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9468
  • Sorghum bicolor
  • SE2850463
  • PIF/harbinger
  • To3
  • chromosome_1:27211600-27211848
  • TTA
  • AGGCCTTGTTTAGTTACGAAAAGTGAAAAGTTTTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              -   ---     GT            GTAC      ACTTTCGTTTGTTTGTGACAAATATTATCCAATCATAGACTAACTAGGATCAAAAGATTCATCTCGTGATTTACAG
  AGGCCTTGTTTAGT TAC   GAAAA  GAAAAGTTTTCG    TGTAGC                                                                            
  |||||||||||||| |||   |||||  ||||||||||||    ||||||                                                                            C
  TCCGGAACAAATCA GTG   CTTTT  TTTTTCAAAAGT    TCTAAG                                                                            
AT              A   GGA     AG            ----      GGGCAGTGTAGCTTAGAACATCGTGTACGTACTTTGTAATTTATATTTGCTTTTGTTTTTGATTAATGTGTCAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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