SE2850464

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9469
  • Sorghum bicolor
  • SE2850464
  • PIF/harbinger
  • To2
  • chromosome_5:52946351-52946832
  • TTA
  • AGGCCTTGTTTACTTCCAAAAAATTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TT            C    -      T    CAAAATAA  -ATA      C        G                        C           G                   CAATTTCGAT    C                      A            A  C    -CATACG     A    C          A      -     -      CAAAA        ---      ACAA
  AGGCCTTGTTTA TTCC AAAAAA TTTG        GA    GTAGCA TTTCGTTT TATTTGATAAATATTGTCTAATTA GGACTAACTAG CTCAAAAGATTCGTCTCGT          CAAA TGTGCAATTAGTTTTTATTTTT TCTATATTTAAT CT CATG       TCTAA GATT GATGTGACGG GAATCT GAAAA ATTTTG     TTTTTGGG   AACTAA    
  |||||||||||| |||| |||||| ||||        ||    |||||| |||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||          |||| |||||||||||||||||||||| |||||||||||| || ||||       ||||| |||| |||||||||| |||||| ||||| ||||||     ||||||||   ||||||     
  TCCGGAACAAAT AAGG TTTTTT AAGC        CT    CATCGT AAAGCAAA ATAAATTGTTTATAATAGGTTAGT CCTGATTGATC GAGTTTTCTAAGTAGAGCA          GTTT ACACGTTAATCAAAAATAAAAG AGATATAGATTA GA GTAC       AGATT CTAA CTACACTGCC CTTAGA CTTTT TAAAAC     AAAAGCCC   TTGATT    
AT            C    C      T    --CTAAAG  GTGA      A        A                        A           -                   CTAAATATCC    A                      C            C  A    ATACACG     -    A          C      A     C      ----C        CAC      CCGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End