Plant MITE

SE2810466

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9471
Sorghum bicolor
SE2810466
Tc1/Mariner
St6
chromosome_1:50429449-50429708
TA
TACTCCCTCCGTCCCTGAAAGAATCAATTCCTAGGATCGTGCCAGTCAAACTTTTTAAAGTTTGACTAACTTTATAGAAAAGAGT

Secondary structure and sequence

TSD TIR

5'

3'

             C               C     ATC  G  --            T   G         C   A           AACAA   CTATAATATAAAATACACATTATATGAAAATATATTTT
TACTCCCTCCGTC CTGAAAGAATCAATT CTAGG   GT CC  AGTCAAACTTTT AAA TTTGACTAA TTT TAGAAAAGAGT     CAT                                      
||||||||||||| ||||||||||||||| |||||   || ||  |||||||||||| ||| ||||||||| ||| |||||||||||     |||                                      A
ATGAGGGAGGCAG GACTTTCTTAGTTAA GATCT   CA GG  TCAGTTTGAAAA TTT AAACTGGTT AAA ATCTTTTTTTA     GAT                                      
             A               A     CAA  -  AT            T   G         T   G           ----C   TCTAAATATCATAGTTTAATCATAATAATCTAAGTAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810466

TACTCCCTCCGTCCCTGAAAGAATCAATTCCTAGGATCGTGCCAGTCAAACTTTTTAAAGTTTGACTAACTTTATAGAAAAGAGTAACAACATCTATAATATAAAATACACATTATATGAAAATATATTTTATGATGAATCTAATAATACTAATTTGATACTATAAATCTTAGCATTTTTTTCTAGAAATTTGGTCAAAGTTTTAAAAGTTTGACTTAGGACAACTCTAGAAATTGATTCTTTCAGAGACGGAGGGAGTA

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