Plant MITE

SE2850468

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9473
Sorghum bicolor
SE2850468
PIF/harbinger
To2
chromosome_5:34612184-34612431
CTA
GGCCTTGTTTAGTTC

Secondary structure and sequence

TSD TIR

5'

3'

CTA          A    -AATTTTT           -----  A    GTAGCATTTTGTTTGTATTTGATAAATATTGTCTAATTATGGACTAACTAGGCTCAAAAGATTCGTCTCGCAAATTAC
   GGCCTTGTTT GTTC        TTTTGTAAAAT     GG CACT                                                                              
   |||||||||| ||||        |||||||||||     || ||||                                                                              A
   CCGGAACAAA CAAG        AAAACGTTTTA     TC TAAA                                                                              
ATC          A    GGTTTTTT           AAAAG  -    GGGTAGTGTAGTTTAGAACGCCGTGTACATATCTCGTAATTTATATCTATTTTCTTTATTGATTAATGTGTCAAATGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850468

CTAGGCCTTGTTTAGTTCAATTTTTTTTTGTAAAATGGACACTGTAGCATTTTGTTTGTATTTGATAAATATTGTCTAATTATGGACTAACTAGGCTCAAAAGATTCGTCTCGCAAATTACAGGTAAACTGTGTAATTAGTTATTTCTTTTATCTATATTTAATGCTCTATACATGTGCCGCAAGATTTGATGTGATGGGAAATCTGAAAAATTTTGCAAAATTTTTTGGGAACAAAACAAGGCCCTA

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