SE2810476

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9481
  • Sorghum bicolor
  • SE2810476
  • Tc1/Mariner
  • St16
  • chromosome_3:73953336-73953485
  • TA
  • TACTCCCTCCGTTCCAAATTATAAGTCACTTTAACTTTTTTTGGTACATTCATTTTGCTATGCATCTAGATA

Secondary structure and sequence

TSD    TIR
5'



3' 
         C                CAC   A        T   A         T      C         AAT
TACTCCCTC GTTCCAAATTATAAGT   TTT ACTTTTTT GGT CATTCATTT GCTATG ATCTAGATA   
||||||||| ||||||||||||||||   ||| |||||||| ||| ||||||||| |||||| |||||||||   A
ATGAGGGAG CAAGGTTTAATATTCA   AAA TGAAGAAA CCA GTAGGTAAA CGATAC TAGATCTGT   
         A                ACA   C        -   A         C      A         ATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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