SE2850478

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9483
  • Sorghum bicolor
  • SE2850478
  • PIF/harbinger
  • To50
  • chromosome_7:9155890-9156182
  • TAA
  • AGAGCATCTCCAACAGCCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                C    CTAAATCTCA       --   CATCATTTGGAGAGCCATTTGCATAAAAATCGCTTTCTATATTTTTTTACTTTCCAACAGTTTTGCTAAATCTCATGCGCACTCTAGAGAGTCATTCTCGTCTT
  AGAGCATCTCCAACAG CTTT          CTCTCTA  AAT                                                                                                        
  |||||||||||||||| ||||          |||||||  |||                                                                                                         
  TCTCGTAGAGGTTGTC GAAA          GAAAGAT  ATG                                                                                                        
AA                T    ---CATATAA       TT   ATCCTTATCGTTAAAACCACTTTTTGATGGGAGGTTGTCGAAGAGATTTACCAGTAGGTTTATATCGGTAACAGATAAGGCCCAAAAAGCGATCGGTTTATATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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