Plant MITE

SE2810482

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9487
Sorghum bicolor
SE2810482
Tc1/Mariner
St13
chromosome_5:60345735-60345972
TA
TACTCAATCCATCCCAAATTGTAAGTCGTTTGACTTTTTTAATATCAAGTTTGACCACTTGTCTTATTCAAAGTTTTGTACAAAATATTACTTTTTTGTTGTGTATTGGTTTATT

Secondary structure and sequence

TSD TIR

5'

3'

     AA                                 A  A                             -T     A    -   -   CT   TT     GTA    TTT   AAT
TACTC  TCCATCCCAAATTGTAAGTCGTTTGACTTTTTT AT TCAAGTTTGACCACTTGTCTTATTCAAAG  TTTGT CAAA ATA TTA  TTT  GTTGT   TTGG   ATT   
|||||  ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||  ||||| |||| ||| |||  |||  |||||   ||||   |||    
ATGAG  AGGTAGGGTTTAACATTCAGCAAACTGAAAAAA TG AGTTCAAACTGGTGAGCAGAATAAGTTTT  AAACA GTTT TAT AGT  AAA  CAGTA   AACT   TGA   
     GG                                 A  G                             TT     C    A   C   TT   TT     -AG    TCT   AAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810482

TACTCAATCCATCCCAAATTGTAAGTCGTTTGACTTTTTTAATATCAAGTTTGACCACTTGTCTTATTCAAAGTTTTGTACAAAATATTACTTTTTTGTTGTGTATTGGTTTATTAATAAAAGTTCTTCAAGAATGACTTAAATTTGACTATATTTGCACAAATTTTTTGAATAAGACGAGTGGTCAAACTTGAGGTAAAAAAAGTCAAACGACTTACAATTTGGGATGGAGGGAGTA

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