SE2810485

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9490
  • Sorghum bicolor
  • SE2810485
  • Tc1/Mariner
  • St25
  • chromosome_3:61283533-61283791
  • TA
  • TACTCCCTCCGTCCGCAAAAGAATGTAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
    C         G               AT  GATCTGTGCCGGTCAATGTAGTTCAAGTTTGACCAAGTTTATAGTAAATACTATTAGCAATTATGTCTCCAAGTAAATTTATTATGAAAATATATT
TACT CCTCCGTCC CAAAAGAATGTAATT  GG                                                                                                
|||| ||||||||| |||||||||||||||  ||                                                                                                C
ATGA GGAGGCAGG GTTTTCTTACGTTAA  GA                                                                                                
    T         A               --  GTGAAAAGCTCCTCAGTTCGTCAAACTTGAAACTGATTTAAATATATTTTTATGATTGTAAGTTCTACGTTTTATTTATGGTAATCTAAACGATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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