SE2850490

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9495
  • Sorghum bicolor
  • SE2850490
  • PIF/harbinger
  • To3
  • chromosome_8:4663490-4663739
  • TAA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             TTCCCACCAAAATCCAAAAAGTTTT     TTTTCCGTCACATCAAATCTTGCGGCACATGCATAAAACACTAAATATAGACGAAAACAAAAACTAATTACACAGTTTTTCTGTAAATCGC
  AGGCCTTGTTTAG                         CAAGA                                                                                           
  |||||||||||||                         |||||                                                                                           G
  TCCGGAACAAATC                         CGCTT                                                                                           
AA             -----------------------TA     AAAAAAAACCTAAAGCGATGACATCGTGAAAAGCAAACAAACACCGTTTATAACAGGTTGGTATCTGATTGATCTCAGTTTTCTAAGCAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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