SE2810491

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9496
  • Sorghum bicolor
  • SE2810491
  • Tc1/Mariner
  • St26
  • chromosome_3:52665958-52666218
  • TA
  • TACTCCCTCCGTCCCAAAAAGAGTGCACATCCCACTATTCAAGGGGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
        CC     AAA             C A  A   A       AACC   C             AATACATACA          ---C           ATA       A --CA    T      ATCA
TACTCCCT  GTCCC   AAGAGTGCACATC C CT TTC AGGGGTC    AAT TCAAGTTTGACTA          AAAGAAGGTA    TAACATTTATG   TCAAATA G    TTAT AGATTA    
||||||||  |||||   ||||||||||||| | || ||| |||||||    ||| |||||||||||||          ||||||||||    |||||||||||   ||||||| |    |||| ||||||    T
ATGAGGGA  CAGGG   TTCTTACGTGTAG G GA AGG TCCTCAG    TTA AGTTCAAACTGAT          TTTCTTTTAT    GTTGTAAGTAT   GGTTTAT C    AATA TTTAAT    
        TA     AGA             A C  G   C       GTAA   A             -----CTAAA          AATA           AGA       C ATAG    C      AACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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