SE2850494

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9499
  • Sorghum bicolor
  • SE2850494
  • PIF/harbinger
  • To1
  • chromosome_6:5740069-5740318
  • TAA
  • AGGCCTTGTTTAGATGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C              CCAAAAAAACCC        -----------ACA      CCCATCACATCGAATCTTGTGGCACATGCATGGAGTATTAAATATAGATAAAAATAAAAACTAATTACACAGTTTG
  AGG CTTGTTTAGATGCA            AAAACTTT              AGATTC                                                                            
  ||| ||||||||||||||            ||||||||              ||||||                                                                            T
  TCC GAACAAATCTACGT            TTTTGAAA              ACATCG                                                                            
AA   C              ------------        AACCTAAAACTGTG      TGAAAGCAAAAATAAACTGTTTGTAACAGATTAGTACCTCATTGATCCGAATTTTCTAAGCAGAGCACTAAATGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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