Plant MITE

SE2820496

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9501
Sorghum bicolor
SE2820496
Mutator
M11
chromosome_2:57633720-57633975
TTCTAACAT
GGCAACGGATATAATGCAAACTCATCTCTCGTGCAAACTCTAATTTGGA

Secondary structure and sequence

TSD TIR

5'

3'

TTCTAACAT          A  A                      ---------          G  CTGCAA         C       --A   ATGACAGAGGTGGAAGGAGGGATTTATAAAAGTGTGA
         GGCAACGGAT TA TGCAAACTCATCTCTCGTGCAA         ACTCTAATTT GA      GATGTTGAT TAAGGGG   CAC                                     
         |||||||||| || ||||||||||||||||||||||         |||||||||| ||      ||||||||| |||||||   |||                                     T
         CCGTTGTCTA AT ACGTTTGAGTAGAGGGCACGTT         TGAGATTAGA CT      CTACAACTA GTTCCTC   TCT                                     
TACAATCTT          G  C                      TGATACTTT          A  AGTATC         A       GCG   CTCTAACTCATTAAAACATGAATTGGCGAGTGAGAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2820496

TTCTAACATGGCAACGGATATAATGCAAACTCATCTCTCGTGCAAACTCTAATTTGGACTGCAAGATGTTGATCTAAGGGGACACATGACAGAGGTGGAAGGAGGGATTTATAAAAGTGTGATTAAGAGTGAGCGGTTAAGTACAAAATTACTCAATCTCTCTGCGCTCCTTGAATCAACATCCTATGATCAAGATTAGAGTTTTCATAGTTTGCACGGGAGATGAGTTTGCACTAGATCTGTTGCCTTCTAACAT

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