SE2850498

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9503
  • Sorghum bicolor
  • SE2850498
  • PIF/harbinger
  • To37
  • chromosome_2:73800589-73800824
  • TAA
  • AGGTCTTGTTTAGTTCCCAAAATTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                C           AAAATTCCTC     --- TCAAATCTTGTGGCACATGTATGAAACATTAAATATAGATAAAAAATAACTAATTACACAGTTTATATGTAA
  AGGTCTTGTTTAGTTC CAAAATTTTTT          GTCAC   A                                                                        
  |||||||||||||||| |||||||||||          |||||   |                                                                         
  TCCGGAACAAGTTAAG GTTTTAAAAAA          TGATG   T                                                                        
AA                T           ---CCTAAAC     ATA CGTGAAAACAAAAATAAACTGTTAATAACAAATTAGTACCTGATTGATCTAAGTTTTATAAGCAGAATATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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